CeSGO project
OverviewEn utilisant les Technologies de l’Information et de la Communication (TIC) ainsi que des logiciels et standards internationaux pour la gestion des métadonnées, l’analyse et le partage de données ainsi que la collaboration scientifique, CeSGO propose la mise en place d’une plate-forme e-Science couplée à un environnement virtuel de recherche centré sur les besoins des communautés des sciences de la vie.
SEEK ID: https://research-sharing.cesgo.org/projects/2
Public web page: https://www.cesgo.org
Organisms: Escherichia coli, Lactococcus lactis, Oncorhynchus mykiss
CesGO PALs: No PALs for this Project
Project created: 14th Oct 2016
Related items
Projects: Training, CeSGO project
Institutions: Default Institution
Projects: CeSGO project
Institutions: GenOuest
Projects: CeSGO project, Training, Rapsodyn, Test_IFB, Training_private
Institutions: GenOuest, Institut Français de Bioinformatique
https://orcid.org/0000-0002-8959-8402
Projects: CeSGO project, EnginesOn project, FEED-A-GENE, Training, CORAIL MAD, Rapsodyn
Institutions: GenOuest, Biogenouest
The CeSGO project itself. Software development and dissemination activities. This project will help to gain a better undestanding of the pros and cons of collaborative and scientific data management tools on a bioinformatics facility.
Euryhalin teleosts can live in freshwater as well as in seawater. The success of their survival depends then on their osmotic acclimation capacities. The objective of my work is to describe acclimation processes in the salted water at the rainbow trout by a study coupling functional genomic and genetic approaches. From a first differential gill transcriptomic study, a list of candidates genes was established. This study also allowed to investigate the physiological answer to a hyperosmotic kinetics ...
Dissemination on the CeSGO project and environment
How people are using the CeSGO infrastructure and its different services.
There is increasing evidence that the ability to adapt to seawater in teleost fish is modulated by genetic factors. Most studies have involved the comparison of species or strains and little is known about the genetic architecture of the trait. To address this question, we searched for QTL affecting osmoregulation capacities after transfer to saline water in a nonmigratory captive-bred population of rainbow trout. A QTL design (5 full-sib families, about 200 F2 progeny each) was produced from a ...
Submitter: Cyril Monjeaud
Investigation: Detection Of QTL and functional genomics study ...
Assays: Transcription profiling, clinical chemistry analysis
90 trouts are transferred from freshwater to seawater during 21 days. Plamsatic ion concentrations and gill transcriptome expression are studied and related to better understand seawater acclimation functional processes on Rainbow trout.
Submitter: Cyril Monjeaud
Investigation: Detection Of QTL and functional genomics study ...
Assays: No Assays
Submitter: Cyril Monjeaud
Assay type: Transcriptional Profiling
Technology type: Microarray
Investigation: Detection Of QTL and functional genomics study ...
Submitter: Cyril Monjeaud
Assay type: Reactomics
Technology type: Chemostat Measurement
Investigation: Detection Of QTL and functional genomics study ...
Submitter: Olivier Collin
Assay type: Software development
Technology type: Information Technology
Investigation: CeSGO
Study: CeSGO usage
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Kinetic Model of Lactococcus lactis PYK LightningSimulate Model on JWS
Creator: Cyril Monjeaud
Submitter: Cyril Monjeaud
Model type: Partial differential equations (PDE)
Model format: SBML
Environment: Not specified
Abstract (Expand)
Authors: Julie A. McMurry, Nick Juty, Niklas Blomberg, Tony Burdett, Tom Conlin, Nathalie Conte, Mélanie Courtot, John Deck, Michel Dumontier, Donal K. Fellows, Alejandra Gonzalez-Beltran, Philipp Gormanns, Jeffrey Grethe, Janna Hastings, Jean-Karim Hériché, Henning Hermjakob, Jon C. Ison, Rafael C. Jimenez, Simon Jupp, John Kunze, Camille Laibe, Nicolas Le Novère, James Malone, Maria Jesus Martin, Johanna R. McEntyre, Chris Morris, Juha Muilu, Wolfgang Müller, Philippe Rocca-Serra, Susanna-Assunta Sansone, Murat Sariyar, Jacky L. Snoep, Stian Soiland-Reyes, Natalie J. Stanford, Neil Swainston, Nicole Washington, Alan R. Williams, Sarala M. Wimalaratne, Lilly M. Winfree, Katherine Wolstencroft, Carole Goble, Christopher J. Mungall, Melissa A. Haendel, Helen Parkinson
Date Published: 29th Jun 2017
Publication Type: Not specified
Abstract (Expand)
Authors: Yvan Le Bras, Olivier Collin, Cyril Monjeaud, Vincent Lacroix, Éric Rivals, Claire Lemaitre, Vincent Miele, Gustavo Sacomoto, Camille Marchet, Bastien Cazaux, Amal Zine El Aabidine, Leena Salmela, Susete Alves-Carvalho, Alexan Andrieux, Raluca Uricaru, Pierre Peterlongo
Date Published: 1st Dec 2016
Publication Type: Not specified
Abstract (Expand)
Authors: G. A. Sacomoto, J. Kielbassa, R. Chikhi, R. Uricaru, P. Antoniou, M. F. Sagot, P. Peterlongo, V. Lacroix
Date Published: 2nd May 2012
Publication Type: Not specified
Abstract (Expand)
Authors: Yvan Le Bras, Nicolas Dechamp, Francine Krieg, Olivier Filangi, René Guyomard, Mekki Boussaha, Henk Bovenhuis, Thomas G Pottinger, Patrick Prunet, Pascale Le Roy, Edwige Quillet
Date Published: 22nd Jun 2011
Publication Type: Not specified
Presentation of the CeSGO concepts to the DMP-OPIDoR team
Creator: Olivier Collin
Submitter: Olivier Collin
