Example Experimental Assay
from https://fairdomhub.org/assays/521?graph_view=tree
An Experimental Assay is a standardized measurement or diagnostic experiment using a specific protocol, applied to material from a study. Examples include RNA sequencing, proteomics, metabolomics, and many others.
There are many Experimental Assay Types to choose from, as well as many Technology Type. Moreover, one can create new types in both cases.
Finally, note that one may also associate this assay with one or more organisms, add samples, data files, SOP, any type of documents actually.
For a SOP example, one can be found in https://demo.fairdomhub.org/investigations/2?graph_view=tree#sops, or https://www.ebi.ac.uk/arrayexpress/experiments/E-MEXP-115/. (I don't understand much of what I see). Here I'll add a SOP from another project, as I can't see how to create one.
SEEK ID: https://research-sharing.cesgo.org/assays/71
Experimental assay
Projects: Test_IFB
Investigation: Demonstration ISA
Study: Example Study
Assay position:
Assay type: Experimental Assay Type
Technology type: Technology Type
Organisms: No organisms
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Created: 18th Sep 2020 at 12:35
Last updated: 18th Sep 2020 at 13:10
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Projects: Test_IFB
Institutions: Institut Français de Bioinformatique
L'objectif de ce projet est d'explorer le concept ISA. L'investigation "Demonstration ISA" est simplement cela : la création d'une structure minimale ISA.
D'autre part je (Paulette) me suis aussi amusée à explorer les fonctionalités SEEK/ISA en copiant une partie du contenu de https://demo.fairdomhub.org/investigations/2, voir https://research-sharing.cesgo.org/investigations/58.
From https://fairdomhub.org/projects/75 : The SEEK is a web interface to a database of research "assets" organised in ...
Public web page: https://www.france-bioinformatique.fr
Comme son nom l'indique, nous allons simplement créer une simple structure/ arbre ISA.
Submitter: Paulette Lieby
Studies: Example Study
Assays: Example Experimental Assay, Example Modelling Analysis
From https://fairdomhub.org/studies/244?graph_view=tree
A Study corresponds to an experiment whose design reflects a specific biological research question. It is part of an Investigation into a particular process, phenomenon or thing. A Study will have Assays that are "measurement experiments", a standardized measurement or diagnostic experiment using a specific protocol, applied to material from a Study.
Submitter: Paulette Lieby
Investigation: Demonstration ISA
Assays: Example Experimental Assay, Example Modelling Analysis
